Additional file 2 of The infant gut resistome is associated with E. coli and early-life exposures

Additional file 2 Table S1: Baseline Characteristics by Single vs. Paired-end Reads. Table S2: Prevalence, Mean, and Median of ARGs by Sample Age. Table S3: Negative Binomial Regression of Unique ARG Markers. Table S4: Negative Binomial Regression of Relative Abundance of ARGs. Table S5: Analysis of 2 Infants with Overall ARG Relative Abundance > 10,000 at 1 Year. Table S6: MaAsLin2 Analysis of Antimicrobial Resistance Genes Adjusted for Covariates and Early-life Exposures. Table S7: PERMANOVA of the Resistome. Table S8: Linear Models to Assess Difference between 1-Year and 6-Week Samples by Covariates. Table S9: MaAsLin2 Analysis of HUMAnN2 Gene Families Adjusted for Covariates and Early-life Exposures.