HMMs and multiple sequence alignments of clusters of effectors determined during remote homology analyses.Markov clusters (level 2b clusters in the paper) are prefixed by `markov-` , and PSSM clusters
BackgroundDevelopment of sensitive sequence search procedures for the detection of distant relationships between proteins at superfamily/fold level is still a big challenge. The intermediate sequence
Protein remote homology detection is one of the most important problems in bioinformatics. Discriminative methods such as support vector machines (SVM) have shown superior performance. However, the pe