Assessment of Haplotype-resolved genome assembly in TGY genome
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The dataset includes three files, 10x.WH.phase.txt.gz, PB.WH.phase.txt.gz and ALLHiC.hapVar.snps.gz. The 10x.WH.phase.txt.gz is a file recorded the phased SNPs generated by whatshap using 10x Genomics Linked reads. Similarly, the PB.WH.phase.txt.gz contains phased SNPs by whatshap using PacBio long reads. And ALLHiC.hapVar.snps.gz contain the allelic variants identified by a comparison between two haplotypes using NUCMER program.
本数据集包含三个文件:10x.WH.phase.txt.gz、PB.WH.phase.txt.gz以及ALLHiC.hapVar.snps.gz。其中10x.WH.phase.txt.gz为记录了由whatshap软件利用10x Genomics链接读长(Linked reads)数据生成的分型单核苷酸多态性(Single Nucleotide Polymorphisms, SNPs)的结果文件;PB.WH.phase.txt.gz同理,其为记录了由whatshap软件基于PacBio长读长数据生成的分型单核苷酸多态性(SNPs)的结果文件;ALLHiC.hapVar.snps.gz则为存储了通过NUCMER软件比对两条单倍型后鉴定得到的等位变异的结果文件。



