Sample meta data
收藏DataONE2018-05-09 更新2024-06-08 收录
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资源简介:
meta data associated with each sample, and columns:
* **id** - unique ID for sample. Composed of sample number, cell line, and dosage information.
* **sample** - sample number. Range from 1-230. Each set of 5 are the treatments for one individual, in increasing concentrations of dox.
* **cell_line** - the cell line number. Each cell line corresponds one individual.
* **dbgap** - anonymized ID for matching cell_line to genotypes.
* **sample_id** - anonymized ID assigned to each unique combination of `dbgap` and `dosage.
* **dosage** - the concentration of dox used in the treatment.
* **rin** - the RNA Integrity Number (RIN). Range from 1-10.
* **rna_conc** - the RNA concentration (ng/uL) after RNA extraction.
* **lib_prep_batch** - the batches the libraries were prepared in.
* **index** - the TruSeq adapter index used for multiplexing.
* **library_conc** - the concentration (ng/uL) of the library measured on the Bioanalyzer.
* **fragment_size** - the mean fragment size as measured on the Bioanalyzer.
* **qpcr** - the library concentration (nmol) as measured via qPCR.
* **qpcr_dilute** - the concentration (nmol) of the diluted library.
* **master_mix** - the master mix for pooling libraries. 10 samples (2 individuals) per master mix.
* **lane_perc** - The percentage of sequences in one lane that were assigned to a sample.
创建时间:
2018-05-09



