Deladenus siricidicola genes involved in parasitism and host immunomodulation
收藏researchdata.up.ac.za2023-05-31 更新2025-01-22 收录
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https://researchdata.up.ac.za/articles/dataset/Deladenus_siricidicola_genes_involved_in_parasitism_and_host_immunomodulation/20292564/1
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This dataset include the listed multiple files.
Amino acid sequences of the 23 curated D. siricidicola genes potentially involved in parasitism and host immunomodulation.The files for the sequencing appear as FASTA format and can open with: plain text editor, e.g., TextEdit, or sequence alignment software, e.g., MEGAX
Results of local BLAST searches of 11 Steinernema carpocapsae (Sc) and 1 S. glaseri (Sg) parasitism and immunomodulation genes performed against the genome and proteome of D. siricidicola. this apear as CSV format (spreadsheets) and can open with TextEdit, MS Excel
List of orthogroups with the gene IDs from 17 nematode species assigned to each by the algorithm OrthoFinder. It include the file in plain text format which can open with TextEdit
Orthologues between the relevant species pairs, namely S. carpocapsae (SCAR) with D. siricidicola (DSIR), and S. glaseri (SGLA) with D. siricidicola.this is in CSV format and can open with TextEdit, MS Excel
Results of hmmsearch function of D. siricidicola genes using a serine protease and serine protease inhibitor (serpin) hidden Markov model, respectively in plain text format and can open with TextEdit
Results of comparing the 23 curated D. siricidicola parasitism/host immunomodulation genes with the InterPro database:TSV format and open with: TextEdit, MS Excel.
本数据集涵盖了所列的多项文件。其中包含23个经过精心挑选的D. siricidicola基因的氨基酸序列,这些基因可能与寄生和宿主免疫调节有关。测序文件以FASTA格式呈现,可使用纯文本编辑器,例如TextEdit,或序列比对软件,例如MEGAX打开。11个Steinernema carpocapsae(Sc)和1个S. glaseri(Sg)的寄生和免疫调节基因的本地BLAST搜索结果,针对D. siricidicola的基因组及蛋白质组进行,这些结果以CSV格式(电子表格)呈现,并可使用TextEdit,MS Excel打开。OrthoFinder算法将17个线虫物种的基因ID分配到各自的正同源群中,所包含的文件为纯文本格式,可使用TextEdit打开。涉及相关物种对的直同源,即S. carpocapsae(SCAR)与D. siricidicola(DSIR),以及S. glaseri(SGLA)与D. siricidicola(DSIR)之间的直同源,以CSV格式呈现,并可使用TextEdit,MS Excel打开。使用丝氨酸蛋白酶和丝氨酸蛋白酶抑制剂(serpin)的隐马尔可夫模型对D. siricidicola基因进行hmmsearch功能的结果,分别以纯文本格式呈现,并可使用TextEdit打开。比较23个经过精心挑选的D. siricidicola寄生/宿主免疫调节基因与InterPro数据库的结果,以TSV格式呈现,并可使用TextEdit,MS Excel打开。
提供机构:
University of Pretoria



