Data Sheet 1_Exploring the predictive “psycho-biomarkers” for checkpoint immunotherapy in cancer.zip

BackgroundIn recent decades, cancer immunotherapy has transformed the treatment landscape, offering significant advantages over traditional therapies by improving progression-free survival (PFS) and overall survival (OS). However, immune checkpoint inhibitors (ICIs) treatment has been associated with an increased risk of mortality in its early stages. Therefore, identifying reliable biomarkers to predict which patients will benefit clinically from ICIs therapy is critical. Depression, a common form of chronic psychological stress, has emerged as a regulator of tumor immunity and is gaining attention as a target for novel cancer treatments. To date, no studies have explored the potential of depression-related genes in predicting response to ICIs therapy.
MethodsPublic datasets of ICIs-treated patients were obtained from the TCGA and GEO databases, followed by comprehensive analyses, including bulk mRNA sequencing (mRNA-seq), co-expression network construction, and Gene Ontology enrichment. Regression analysis, using Cox proportional hazards and least absolute shrinkage and selection operator (Lasso), identified eight depression-related genes to build a predictive model for clinical outcomes in ICIs therapy. Additionally, correlations were explored between the depression-related predictive score and clinical parameters, including tumor mutational burden (TMB) and immune cell infiltration, establishing the score as a potential predictor of ICIs response.
ResultsThe model categorized patients into high- and low-responsiveness groups, with significant differences in disease-free survival (DFS) between them. Validation using both internal and external datasets demonstrated the model’s strong predictive accuracy. Further analysis revealed that this response stratification correlates with immune cell abundance and TMB in cancer patients.
ConclusionThis study suggests that depression-related genetic traits could serve as biomarkers for ICIs therapy response, tumor mutations, and immune system alterations. Our findings offer insights into personalized therapeutic strategies for early intervention and prognosis in specific cancer types.