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Genome-wide analysis of the effect of knockdown of the nuclear poly(A) binding proteins, PABPN1 and ZC3H14 on steady-state mRNA levels

ChEBI2014-10-06 更新2026-07-21 收录

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RNA结合蛋白功能

数据链接：

https://www.ebi.ac.uk/biostudies/ArrayExpress/studies/E-GEOD-62067 数据链接链接失效反馈

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Genome-wide analysis of the effect of knockdown of the nuclear poly(A) binding proteins, PABPN1 and ZC3H14 on steady-state mRNA levels

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创建时间：

2014-10-06

环状RNA-蛋白质相互作用

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The exon junction complex (EJC) is a central effector of mRNAs fate, linking nuclear processing to mRNA transport, translation and surveillance. Little is known about its transcriptome-wide targets. W

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RIP-seq of RNA associated in vivo with the ProQ, Hfq or CsrA proteins, performed in Salmonella Typhimurium SL1344 or Escherichia coli W3110. Escherichia coli

细菌RNA-蛋白质互作组学

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While many general RNA-binding proteins have been described in eukaryotes, the small RNA chaperone Hfq and the translational regulator CsrA remain the only known global RNA-associated cofactors involv

NIAID Data Ecosystem20

Best practices for eCLIP experiments and analysis [uncertain quality]

RNA结合蛋白功能

CLIP数据分析

Enhanced cross-linking immunoprecipitation (eCLIP) featuring a size-matched input control has been recently applied to profile the binding sites of more than one hundred RNA binding proteins (RBPs). H

NIAID Data Ecosystem20

RNA-sequencing of PC3M prostate cancer cells depleted of the RNA binding protein HNRNPA2B1

前列腺癌分子机制

RNA结合蛋白功能

RNA binding proteins (RBPs) play important roles in cellular stress responses. Here we investigated the association between HNRNPA2B1, an RBP upregulated in prostate cancer, and expression of genes in

NIAID Data Ecosystem50

Mapping of Nab3 RNA-binding sites in Saccharomyces cerevisiae with abrogated binding of Nab3 to PIC2

RNA结合蛋白功能

转录组占据分析

Using CRAC, we compared the transcriptomic occupancy of Nab3 in a Saccharomyces cerevisiae BY4741 parental strain (PIC2-GFP) and two derived mutants lacking Nab3 RNA-binding sites in PIC2. The purpose

NIAID Data Ecosystem20

Genome-wide analysis of the effect of knockdown of the nuclear poly(A) binding proteins, PABPN1 and ZC3H14 on steady-state mRNA levels

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