Plant neighborhood shapes diversity and reduces interspecific variation of the phyllosphere microbiome. Meyer et. al 2022. ISME-J.

This is the data archive for: Meyer et al. 2022. Plant neighborhood shapes diversity and reduces interspecific variation of the phyllosphere microbiome. ISME-J. Please cite this article when using these archived data.DOI: 10.1038/s41396-021-01184-6<br>Included are raw genetic sequences of the V5-V7 region of the 16S rRNA gene derived from experimental leaf surfaces of tomato, pepper, and bean plants.<br><br>Included in this archive are:Raw sequence data (RawFASTQ.zip)Reproducible R scripts (MeyerEtAl2021_RScript.R, VarPartSupplement.R)R objects corresponding to archived scripts (.RDS)Data for generating certain plots (PermanovaRValues.txt, PermanovaValuesByHost.txt, NeutralModelRValuesByHarvest.txt, VarPartHostEffects.txt)Sample metadata (NeighborhoodMetaData.txt)Phylogenetic Tree file for sample ASVs (PhyloTree.tre)Geographic distance matrix for distances between plots (GeodistNeighborhood.txt)ddPCR (microbial abundance) data (ddPCR_Neighborhood.csv)R script for rarefication function (Rarefy_mean.R)Taxonomic assignments for all ASVs in study (Taxonomy_Neighborhood.txt)R image files to load R environment instead of running script (MeyerEtAl2021_RScript.RData, VarPartSupplement.RData)<br><br><br>