Annotation of the repeat content of the Muscicapa striata assembly characterized by RepeatMasker-v4.0.7 (Smit et al. 2013-2015) with the database containing our specific repeat library (generated usin
We annotated repeats in assemblies through two rounds of annotation with RepeatMasker4.1.0 (Smit et al. 2020), the first round used custom repeat libraries generated by RepeatModeler2 for each respect
We totally identified 998,369 repeat elements and the total length is 196,755,237 bp, accounting for 53.98% of whole sequence. The total length of 23,595 tandem repeats (TR) is 1,374,491 bp, of which
Additional file 1: Table S1. Summary of Repeat Browser statistics. This table contains information regarding nomencature changes between the Repeat Browser, RepeatMasker and Dfam as well as several st
