EnsembleSeq: A workflow towards real-time, rapid and simultaneous multi-kingdom amplicon sequencing for holistic and resource-effective microbiome research at scale

This basecalled nanopore data was generated from the EnsembleSeq workflow. Each barcode specific fastq file is created by merging multiple real-time generated passed fastq files during the sequencing of reads specific to the given barcode. Sequence data contains both bacteriome and mycobiome specific reads as described in the EnsembleSeq workflow.