Pubertal timing and chronotype diverge genetically amid broad hypothalamic similarity

Code, derived source data and provenance materials for the manuscript "Pubertal timing and chronotype diverge genetically amid broad hypothalamic similarity." The archive contains scripts and machine-readable outputs for LD score regression, LAVA local genetic correlation, CELLECT-MAGMA hypothalamic cell-type enrichment, colocalization and secondary Mendelian-randomization analyses. It includes per-figure source data, all 971 LAVA tests, all 15 PC1-residual trait pairs, AAM and chronotype within-trait ranks, the five significant AAM-chronotype blocks, and a data-lock table with dataset accessions and checksums. Raw GWAS summary statistics, the HYPOMAP single-nucleus atlas and LD-reference files are not redistributed and must be obtained from their original providers. PC1-residual correlations are descriptive because the component was estimated from six trait profiles; LAVA boundary estimates are explicitly flagged.