Additional file 3 of Did the early full genome sequencing of yeast boost gene function discovery?
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Additional file 3. File 1. This file lists the association between the gene and the article mentioning the gene (defined by the PUBMED ID). Count defines the number of times a gene is mentioned in the associated article. FPE is the FPE-score of the gene in the associated article. File 2. This file lists the yeast-relevant literature items with their publication year. File 3. This file lists the number of new genes reaching a specific FPE threshold as defined by T-threshold categories throughout the years. File 4. This file provides the information of which year the gene (GeneID) is first mentioned (First Mentioned). Subsequently, we provide the number of articles that have been published for the gene until it reaches a specific FPE threshold (T1, T5, T10, ..., T100, T500). The column with "−" value means the gene has not achieved that FPE threshold in the study till December 2022. File 5. This file provides the list of journals publishing the yeast relevant articles until December 2022. The total number of articles for each journal is listed. The projected principal components for the 15 T-threshold categories are given as PC1, PC2 until PC15. Subsequently, the percentage of the contributed FPE score for each journal is given for T0 through T500.
补充材料3。 文件1:该文件记录了基因与提及该基因的文献(以PubMed编号(PubMed ID)标识)之间的关联关系。其中,Count字段表示某基因在关联文献中被提及的总频次;FPE评分(FPE-score)为该基因在对应关联文献中的得分。 文件2:该文件列出了酵母相关文献条目及其发表年份。 文件3:该文件统计了历年中达到特定FPE阈值的新增基因数量,阈值按T阈值分类(T-threshold categories)进行划分。 文件4:该文件提供了基因(GeneID)的首次提及年份(First Mentioned)信息。此外,本文件还给出了各基因在达到特定FPE阈值(T1、T5、T10……T100、T500)前,已发表的关联文献总数量。字段值为"−"的列,表示截至2022年12月,该基因在本研究中未达到对应FPE阈值。 文件5:该文件列出了截至2022年12月发表过酵母相关文献的期刊列表,并统计了每种期刊的发文总量。同时,本文件给出了15个T阈值分类的投影主成分(projected principal components),即PC1至PC15;此外还提供了在T0至T500各个阈值下,各期刊的FPE评分贡献占比。



