Supporting data for Comparison of Oxford Nanopore and Illumina sequencing for SARS-CoV-2 variant monitoring in wastewater

This dataset contains the FASTQ files used in the paper Comparison of Oxford Nanopore and Illumina sequencing for SARS-CoV-2 variant monitoring in wastewater. The FASTQ files are classified in 2 different folders: MinION and MiSeq. Inside the MinION folder, there are two more folders, one for the R9.4.1 flow cell data and the other for the R10.4.1 flow cell data. Twist synthetic RNA mixtures are named as mix1, mix2, etc. Twist synthetic RNA corresponding to the Wuhan sequence is named as mix11_WH Wastewater samples are named as WWTP_1, WWTP_2, etc.