MOESM3 of The paralog-to-contig assignment problem: high quality gene models from fragmented assemblies
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Additional file 3. Memory and time requirements of the ExonMatchSolver on simulated data. The raw data is provided as Addtional_file3.xlsx. Raw data on memory and time assessment of the ExonMatchSolver on simulated data. The memory and time requirements of the ExonMatchSolver were measured for different numbers of exons (1, 3, 5, 7, 10, 12, 50, 70, 100) and paralogs (4, 6, 8 10, 20. 40, 70, 100) on data simulated with ALF. Memory was estimated as Resident Set Size. Memory and running time were sampled for each combination of paralogs and exons for 20 independent runs of fragmentation and averaged.
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2017-12-19
