μEI is the average duration of parasite incubation in humans and μRS, the average duration of subpatent infection. The province median and range of the mean estimate for sites within a province are sh
The incubation (infectious) period is defined as follows: where is the duration and is the probability that an infected (infectious) individual will have an incubation (infectious) period of days.
This appendix illustrates the process of fitting various parameterisations of the SEiIjR model (M1j & M3j) to low-fidelity D3j incidence reports. We mean by parameterisation the decision of categorisi