Additional file 2 of Decoding the complete organelle genomic architecture of Stewartia gemmata: an early-diverging species in Theaceae

Additional file 2: Supplementary Table 1. Long-read coverage of possible conformational pathways in the S. gemmata genome. Supplementary Table 2. Summary of genomic information of S. gemmata organelles. Supplementary Table 3. Gene contents of the mitochondrial genome of S. gemmata. Supplementary Table 4. Gene contents of the chloroplast genome of S. gemmata. Supplementary Table 5. Relative synonymous codon usage (RSCU) statistics for individual amino acids in S. gemmata mitochondrial and chloroplast genomes. Supplementary Table 6. Statistics of ENC, GC3 values of individual genes in S. gemmata mitochondrial and chloroplast genomes. "-" indicates null values, red numbers are genes with ENC values less than 35. Supplementary Table 7. The information table for S. gemmata mitochondrial genomic RNA editing sites. ❆indicates the acquisition of the start codon, ✱indicates the acquisition of the stop codon. Supplementary Table 8. SSRs in the organelle genome of S. gemmata. p1, p2, p3, p4, p5, p6 in SSR type means Monomeric, Dimeric, Trimeric, Tetrameric, Pentameric, Hexamer. Supplementary Table 9. Tandem repeat sequences in the organelle genome of S. gemmata. Supplementary Table 10. Dispersed repeat sequences in the organelle genome of S. gemmata. Supplementary Table 11. Mitochondrial plastid DNAs (MTPTs) were identified in the mitochondrial genome of S. gemmata. Supplementary Table 12. Classification and characterization of Transposable Element (TE) fragments in the genome of S. gemmata. Supplementary Table 13. TE annotation in the organelle genome of S. gemmata. Supplementary Table 14. Overlap region between TEs and MTPTs in S. gemmata organelle genomes. The asterisk (*) symbols denote TEs found in the two types of organelle genomes. Supplementary Table 15. Species used to construct phylogenetic relationships. Supplementary Table 16. Colinear analysis of the mitochondrial genomes of seven species of Theaceae, including Stewartia gemmata.