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Supp_File_10

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DataONE2013-11-19 更新2024-06-27 收录
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SUPPLEMENTARY FILE 10. Excel file with six sheets showing associations between ABBA and BABA-like sites with gene ontology (GO) terms from the zebra finch genome. The first three sheets refer to ABBA-like sites; the last three sheets refer to BABA-like sites. Sheets 1 and 4 give associations with GO terms related to cellular components (“cc”), sheets 2 and 5 refer to GO terms related to biological processes (“bp”), and sheets 3 and 6 refer to GO terms related to molecular function (“mf”). In each sheet, GO terms are accompanied by the number of zebra finch genes they are annotated to (“annotated”), followed by the number of ABBA or BABA-linked genes they are annotated to (“significant”), followed by the number of ABBA or BABA-linked genes they would be expected to be annotated to by chance (“expected”), followed by the corrected p value for their over-representation in the ABBA or BABA-linked gene set (“corrected”). The only gene set showing significant (p < 0.05) over-representation of any GO term is the ABBA set for cellular components (sheet 1).

补充文件10。该Excel文件包含6个工作表,用于展示斑胸草雀基因组中ABBA位点与类BABA位点和基因本体(Gene Ontology,GO)术语之间的关联关系。其中前3个工作表对应类ABBA位点,后3个工作表对应类BABA位点。工作表1与工作表4对应与细胞组分(cellular components,cc)相关的GO术语,工作表2与工作表5对应与生物过程(biological processes,bp)相关的GO术语,工作表3与工作表6对应与分子功能(molecular function,mf)相关的GO术语。每个工作表内,GO术语后依次附有四组数据:被该GO术语注释的斑胸草雀基因总数(列名:"annotated")、与该GO术语显著关联的ABBA或类BABA基因数(列名:"significant")、随机条件下预期会被该GO术语注释的ABBA或类BABA基因数(列名:"expected"),以及该GO术语在ABBA或类BABA关联基因集中过度富集的校正p值(列名:"corrected")。唯一在任一GO术语上呈现出显著(p < 0.05)过度富集的基因集为对应细胞组分的ABBA基因集(工作表1)。

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2013-11-19
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