Erroneous Predictions of Auxotrophies by CarveMe

This data set shows CarveMe's auxotrophy predictions for 127 diverse bacteria that can make all 20 amino acids. The first table lists the 127 prototrophic bacteria, the NCBI assembly identifiers, and their taxonomy according to the genome taxonomy database (GTDB). The second table lists the erroneous auxotrophy predictions from CarveMe, as well as GapMind's annotation of how the bacterium is likely to make that amino acid (path) as well as the number of steps at each confidence level (nHi, nMed, nLo). Both tables are tab-delimited. <br>本数据集展示了CarveMe工具针对127株可合成全部20种氨基酸的多样化细菌所开展的营养缺陷型（auxotrophy）预测结果。首个表格收录了这127株原养型细菌的相关信息，包括NCBI基因组组装标识符，以及依据基因组分类数据库（Genome Taxonomy Database，简称GTDB）的分类学信息；第二个表格则列出了CarveMe生成的错误营养缺陷型预测结果，同时附带GapMind对该细菌合成对应氨基酸的潜在途径（path）的注释，以及各置信度等级对应的步骤数（nHi、nMed、nLo）。两个表格均采用制表符分隔格式。