mRNA and microRNA profile in colon cancer [mRNA data]

NIAID Data Ecosystem2026-03-11 收录

结肠癌mRNA表达谱

结肠癌转录组分析

数据链接：

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE29621 数据链接链接失效反馈

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资源简介：

Compariosn of mRNA and miRNA profile in colon cancer mRNA was extracted from colon tissues for microarray analysis

创建时间：

2019-03-25

Aberrant expression of select piRNA-pathway genes does not reactivate piRNA silencing in cancer cells

piRNA机制

结肠癌转录组分析

Analysis of PIWIL1 function in COLO205 [ATCC® CCL-222] colon adenocarcinoma cancer cell culture model. Total Small RNAs and small RNAs co-immunoprecipitated with PIWIL1 from COLO205 cells were analyze

NIAID Data Ecosystem80

Interdependent genomic binding of BAP1 and MLL4 regulates a subset of gene expression in HCT116. Interdependent genomic binding of BAP1 and MLL4 regulates a subset of gene expression in HCT116

增强子共调控

结肠癌转录组分析

Our genomic studies show that ~20% of MLL4 chromatin binding sites overlap with BAP1 binding regions in HCT116 human colon cancer cells. By comparing MLL4 and BAP1 localization in wild type and knocko

NIAID Data Ecosystem70

DBC1 is a positive regulator of enhancer epigenomic writers KMT2D and p300 [RNA-seq]

结肠癌转录组分析

DBC1基因调控

We identified DBC1/CCAR2 target genes using RNA-seq analysis in colon cancer cells. mRNA profiles of SW480 WT or DBC1 KO cells were generated by deep sequencing, in triplicate, using Illumina HiSeq250

NIAID Data Ecosystem60

Comparison of KEGG pathways distinguishing between normal colon samples and colonic neoplasms selected from our and two published microarray data.

结肠癌转录组分析

KEGG通路差异

*KEGG terms selected only from data sets normalized with MAS5.0.

NIAID Data Ecosystem70

Control vs ferrichrome. Homo sapiens strain:SW620 cells

结肠癌转录组分析

铁色素作用机制

The colon cancer cells, SW620, were treated ferrichrome. The change of mRNA in ferrichrome treated cells was analyzed by transcriptome analysis.

NIAID Data Ecosystem70