Additional file 8: of Microbiome and ecotypic adaption of Holcus lanatus (L.) to extremes of its soil pH range, investigated through transcriptome sequencing

Plant-assigned transcripts, full results table, annotation and DESeq2 analysis. The table contains the following information for each expressed plant-assigned transcript: 1) The annotation of transcripts: this includes functional annotation (KOG class, KOG group, KOG definition) and best BLAST match against plant-refseq (match accession number, match description, percentage ID, BLAST score, length of alignment and percentage sequence coverage); 2) The full DESeq2 result for each pairwise comparison in shoot (list 1-4) and root (list 5-8): these columns contain the log2foldchange and adjusted P value (FDR) for pairwise comparisons. Pairwise comparisons are coded as follows: soil (A = acid bog soil, L = limestone quarry soil), plant ecotype (a = acid bog plant ecotype, l = limestone quarry plant ecotype) in shoots and roots: Shoot Aa-v-La = Acid bog soil acid ecotype versus Limestone soil acid ecotype, Shoot Al-v-Ll = Acid bog soil limestone ecotype versus Limestone soil limestone ecotype, Shoot Aa-v-Al = Acid bog soil acid ecotype versus Acid bog soil limestone ecotype, Shoot La-v-Ll = Limestone soil acid ecotype versus Limestone soil limestone ecotype, Root Aa-v-La = Acid bog soil acid ecotype versus Limestone soil acid ecotype, Root Al-v-Ll = Acid bog soil limestone ecotype versus Limestone soil limestone ecotype, Root Aa-v-Al = Acid bog soil acid ecotype versus Acid bog soil limestone ecotype, Root La-v-Ll = Limestone soil acid ecotype versus Limestone soil limestone ecotype; 3) The count table; 4) Additional BLAST annotations showing the best BLAST match against Arabidopsis lyrata, Arabidopsis thaliana and Brachypodium distachyon databases (sequence length, match accession number, e-value, percentage ID, BLAST score and length of alignment). (XLSX 18037 kb)