Gene and TE annotation - Merenciano 2023

Gene and TE annotation for wild-type strains of D. melanogaster and D. simulans. Both genomes were annotated with liftoff v.1.6.3, parameters -a 0.5 -s 0.75 -exclude_partial. For D. melanogaster, we used reference genome from flybase r6.16; and for D. simulans we used ref genome from flybase r2.02 D. melanogaster Tropical region (São José do Rio Preto - Brazil): -dmsj23 -dmsj7 D. melanogaster Temperate region (Gotheron - France): -dmgoth101 -dmgoth63 D. simulans Tropical region (São José do Rio Preto - Brazil): -dssj9 -dssj27 D. simulans Temperate region (Gotheron - France): -dsgoth31 -dsgoth613