Additional file 1: Table S1. of Virtual pathway explorer (viPEr) and pathway enrichment analysis tool (PEANuT): creating and analyzing focus networks to identify cross-talk between molecules and pathways

log2 fold change of six selected patients at time points 6 h, 12 h, 24 h, 48 h and 72 h. Data were taken from [20], Affymetrix probe IDs are shown. Table S2. Time-course and patient- dependent clustering of probeIDs that showed differential expression in at least one time point or patient. 24 clusters were created using EDISA 3D clustering, containing 823 non-redundant, and differentially expressed genes. Table S3. Annotation of the EDISA 3D-selected, differentially expressed set of Affymetrix probe IDs. Table S4. GO enrichment of EDISA 3D-selected, differentially expressed set of Affymetrix probe IDs. Table S5. Pathway enrichment of EDISA 3D-selected, differentially expressed set of Affymetrix probe IDs. Table S6. Targets of atorvastatin as identified by STITCH. Table S7. GO enrichment of the atorvastatin focus network. Table S8. Pathway enrichment of atorvastatin focus network using PEANuT. Table S9. Pathway enrichment of the atorvastatin focus network using DAVID. Table S10. Pathway enrichment of the FoxA1/A2/A3 â HMGCR neighbor focus network using PEANuT. Table S11. Pathway enrichment of the FoxA1/A2/A3 â HMGCR neighbor focus network using DAVID. Table S12. Node scores for FoxA1 neighbor focus networks of the six patients used for clustering. (XLSX 5773 kb)