five

Loop sequences and sources for all test cases.

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https://figshare.com/articles/dataset/_Loop_sequences_and_sources_for_all_test_cases_/829346
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For statistics Ncontact, Nout, NSC, and NHB, residues with sequence positions within two residues of each loop residue were excluded from the calculation; only non-hydrogen atoms were considered. aAverage number of residues that make at least one atom-atom contact (distance <4.0 Å) with each loop residue. bAvg. number of residues outside the loop that make an atom-atom contact (dist. <4.0 Å) with each loop residue. cAvg. number of residues that make an atom-atom contact (dist. <4.0 Å) to a loop residue involving an atom requiring side-chain placement (not N, C, Cα, Cβ, O). dAvg. number of hydrogen bonds per residue, defined as donor/acceptor pairs with distance less than 3.2 Å. eTest included two crystallographic neighbors that interact with loop [21], [22]. fLoop with irregular structure that remains rigid upon binding to inhibitors or protein partners; see cited references. gUnpublished 275-residue protein crystal structure from W. Weis and colleagues (see Figs. 5A–D).
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2013-10-21
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