Loop sequences and sources for all test cases.
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For statistics Ncontact, Nout, NSC, and NHB, residues with sequence positions within two residues of each loop residue were excluded from the calculation; only non-hydrogen atoms were considered.
aAverage number of residues that make at least one atom-atom contact (distance <4.0 Å) with each loop residue.
bAvg. number of residues outside the loop that make an atom-atom contact (dist. <4.0 Å) with each loop residue.
cAvg. number of residues that make an atom-atom contact (dist. <4.0 Å) to a loop residue involving an atom requiring side-chain placement (not N, C, Cα, Cβ, O).
dAvg. number of hydrogen bonds per residue, defined as donor/acceptor pairs with distance less than 3.2 Å.
eTest included two crystallographic neighbors that interact with loop [21], [22].
fLoop with irregular structure that remains rigid upon binding to inhibitors or protein partners; see cited references.
gUnpublished 275-residue protein crystal structure from W. Weis and colleagues (see Figs. 5A–D).
创建时间:
2013-10-21



