S1 Tables -

Table A in S1 Tables. Pipeline employed for bioinformatics analysis. Table B in S1 Tables. DADA2 output statistics. Table C in S1 Tables. Statistics on identified features. Table D in S1 Tables. Features differentially presented in the infected bile samples compared to uninfected bile samples. Table E in S1 Tables. Presence-Absence test on bile samples (Infection vs Control). Table F in S1 Tables. Features differentially presented in OF bile versus control samples. Table G in S1 Tables. Features differentially presented in CS bile versus control samples. Table H in S1 Tables. Features differentially presented in OV bile versus control samples. Table I in S1 Tables. Differentially represented taxa among worm samples. Table J in S1 Tables. Features differentially presented in the infected fecal samples compared to uninfected fecal samples. Table K in S1 Tables. Presence-Absence test on feces samples (Infection vs Control) _Metagenomeseq. Table L in S1 Tables. Features differentially presented in OF feces versus control samples. Table M in S1 Tables. Features differentially presented in CS feces versus control samples. Table N in S1 Tables. Features differentially presented in OV feces versus control samples. Table O in S1 Tables. Differentially represented taxa in feces of hamsters. Table P in S1 Tables. The list of unique species for worms only, not identified in any other samples. Table Q in S1 Tables. Features differentially presented in OV worm microbiomes versus CS worm microbiomes. Table R in S1 Tables. Features differentially presented in CS worm microbiomes versus OF worm microbiomes. Table S in S1 Tables. Differentially represented taxa among worm samples. Table T in S1 Tables. Features differentially presented in OV worm microbiomes versus OF worm microbiomes.
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