SNP_rice_HET50-MINFREQ-0

n calling SNP on Oryza glaberima (enriched, genomic and LRPCR libraries) with Mpileup -Bg and Varscan (min_freq_for_hom =0.5 and --min-var-freq 0)为对Oryza glaberrima（非洲栽培稻）的富集文库、基因组文库与长片段PCR（Long-Range PCR, LRPCR）文库开展单核苷酸多态性（Single Nucleotide Polymorphism, SNP）检测，采用参数为-Bg的Mpileup工具配合VarScan工具，其中VarScan的参数设置为：同源等位基因最小频率为0.5，且最小变异等位基因频率为0。