Downsized camera trap images for automated classification

Description: Downsized (256x256) camera trap images used for the analyses in "Can CNN-based species classification generalise across variation in habitat within a camera trap survey?", and the dataset composition for each analysis. Note that images tagged as 'human' have been removed from this dataset. Full-size images for the BorneoCam dataset will be made available at LILA.science. The full SAFE camera trap dataset metadata is available at DOI: 10.5281/zenodo.6627707. Project: This dataset was collected as part of the following SAFE research project: Machine learning and image recognition to monitor spatio-temporal changes in the behaviour and dynamics of species interactions Funding: These data were collected as part of research funded by: NERC (NERC QMEE CDT Studentship, NE/P012345/1, http://gotw.nerc.ac.uk/list_full.asp?pcode=NE%2FP012345%2F1&cookieConsent=A) This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs. XML metadata: GEMINI compliant metadata for this dataset is available here Files: This dataset consists of 3 files: CT_image_data_info2.xlsx, DN_256x256_image_files.zip, DN_generalisability_code.zip CT_image_data_info2.xlsx This file contains dataset metadata and 1 data tables: Dataset Images (described in worksheet Dataset_images) Description: This worksheet details the composition of each dataset used in the analyses Number of fields: 69 Number of data rows: 270287 Fields: filename: Root ID (Field type: id) camera_trap_site: Site ID for the camera trap location (Field type: location) taxon: Taxon recorded by camera trap (Field type: taxa) dist_level: Level of disturbance at site (Field type: ordered categorical) baseline: Label as to whether image is included in the baseline training, validation (val) or test set, or not included (NA) (Field type: categorical) increased_cap: Label as to whether image is included in the 'increased cap' training, validation (val) or test set, or not included (NA) (Field type: categorical) dist_individ_event_level: Label as to whether image is included in the 'individual disturbance level datasets split at event level' training, validation (val) or test set, or not included (NA) (Field type: categorical) dist_combined_event_level_1: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance level 1' training or test set, or not included (NA) (Field type: categorical) dist_combined_event_level_2: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance level 2' training or test set, or not included (NA) (Field type: categorical) dist_combined_event_level_3: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance level 3' training or test set, or not included (NA) (Field type: categorical) dist_combined_event_level_4: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance level 4' training or test set, or not included (NA) (Field type: categorical) dist_combined_event_level_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance level 5' training or test set, or not included (NA) (Field type: categorical) dist_combined_event_level_pair_1_2: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1 and 2 (pair)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_pair_1_3: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1 and 3 (pair)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_pair_1_4: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1 and 4 (pair)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_pair_1_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1 and 5 (pair)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_pair_2_3: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 2 and 3 (pair)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_pair_2_4: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 2 and 4 (pair)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_pair_2_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 2 and 5 (pair)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_pair_3_4: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 3 and 4 (pair)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_pair_3_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 3 and 5 (pair)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_pair_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 4 and 5 (pair)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_triple_1_2_3: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 2 and 3 (triple)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_triple_1_2_4: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 2 and 4 (triple)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_triple_1_2_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 2 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_triple_1_3_4: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 3 and 4 (triple)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_triple_1_3_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 3 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_triple_1_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 4 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_triple_2_3_4: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 2, 3 and 4 (triple)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_triple_2_3_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 2, 3 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_triple_2_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 2, 4 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_triple_3_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 3, 4 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_quad_1_2_3_4: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 2, 3 and 4 (quad)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_quad_1_2_3_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 2, 3 and 5 (quad)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_quad_1_2_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 2, 4 and 5 (quad)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_quad_1_3_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 3, 4 and 5 (quad)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_quad_2_3_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 2, 3, 4 and 5 (quad)' training set, or not included (NA) (Field type: categorical) dist_combined_event_level_all_1_2_3_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at event level: disturbance levels 1, 2, 3, 4 and 5 (all)' training set, or not included (NA) (Field type: categorical) dist_camera_level_individ_1: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance level 1' training or test set, or not included (NA) (Field type: categorical) dist_camera_level_individ_2: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance level 2' training or test set, or not included (NA) (Field type: categorical) dist_camera_level_individ_3: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance level 3' training or test set, or not included (NA) (Field type: categorical) dist_camera_level_individ_4: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance level 4' training or test set, or not included (NA) (Field type: categorical) dist_camera_level_individ_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance level 5' training or test set, or not included (NA) (Field type: categorical) dist_camera_level_pair_1_2: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1 and 2 (pair)' training set, or not included (NA) (Field type: categorical) dist_camera_level_pair_1_3: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1 and 3 (pair)' training set, or not included (NA) (Field type: categorical) dist_camera_level_pair_1_4: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1 and 4 (pair)' training set, or not included (NA) (Field type: categorical) dist_camera_level_pair_1_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1 and 5 (pair)' training set, or not included (NA) (Field type: categorical) dist_camera_level_pair_2_3: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 2 and 3 (pair)' training set, or not included (NA) (Field type: categorical) dist_camera_level_pair_2_4: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 2 and 4 (pair)' training set, or not included (NA) (Field type: categorical) dist_camera_level_pair_2_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 2 and 5 (pair)' training set, or not included (NA) (Field type: categorical) dist_camera_level_pair_3_4: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 3 and 4 (pair)' training set, or not included (NA) (Field type: categorical) dist_camera_level_pair_3_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 3 and 5 (pair)' training set, or not included (NA) (Field type: categorical) dist_camera_level_pair_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 4 and 5 (pair)' training set, or not included (NA) (Field type: categorical) dist_camera_level_triple_1_2_3: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 2 and 3 (triple)' training set, or not included (NA) (Field type: categorical) dist_camera_level_triple_1_2_4: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 2 and 4 (triple)' training set, or not included (NA) (Field type: categorical) dist_camera_level_triple_1_2_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 2 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_camera_level_triple_1_3_4: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 3 and 4 (triple)' training set, or not included (NA) (Field type: categorical) dist_camera_level_triple_1_3_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 3 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_camera_level_triple_1_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 4 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_camera_level_triple_2_3_4: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 2, 3 and 4 (triple)' training set, or not included (NA) (Field type: categorical) dist_camera_level_triple_2_3_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 2, 3 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_camera_level_triple_2_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 2, 4 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_camera_level_triple_3_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 3, 4 and 5 (triple)' training set, or not included (NA) (Field type: categorical) dist_camera_level_quad_1_2_3_4: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 2, 3 and 4 (quad)' training set, or not included (NA) (Field type: categorical) dist_camera_level_quad_1_2_3_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 2, 3 and 5 (quad)' training set, or not included (NA) (Field type: categorical) dist_camera_level_quad_1_2_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 2, 4 and 5 (quad)' training set, or not included (NA) (Field type: categorical) dist_camera_level_quad_1_3_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 3, 4 and 5 (quad)' training set, or not included (NA) (Field type: categorical) dist_camera_level_quad_2_3_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 2, 3, 4 and 5 (quad)' training set, or not included (NA) (Field type: categorical) dist_camera_level_all_1_2_3_4_5: Label as to whether image is included in the 'disturbance level combination analysis split at camera level: disturbance levels 1, 2, 3, 4 and 5 (all)' training set, or not included (NA) (Field type: categorical) DN_256x256_image_files.zip Description: Zip file containing all images used in the analyses DN_generalisability_code.zip Description: Zip file containing code for the analyses Date range: 2011-03-19 to 2018-06-12 Latitudinal extent: 4.6350 to 4.7538 Longitudinal extent: 116.9472 to 117.6253 Taxonomic coverage: All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets.  -  Animalia  -  -  Chordata  -  -  -  Aves  -  -  -  -  Galliformes  -  -  -  -  Passeriformes  -  -  -  -  Cuculiformes  -  -  -  -  -  Cuculidae  -  -  -  -  Columbiformes  -  -  -  -  -  Columbidae  -  -  -  -  Gruiformes  -  -  -  -  -  Gruidae  -  -  -  Mammalia  -  -  -  -  Proboscidea  -  -  -  -  -  Elephantidae  -  -  -  -  -  -  Elephas  -  -  -  -  -  -  -  Elephas maximus  -  -  -  -  -  -  -  -  Elephas maximus borneensis  -  -  -  -  Erinaceomorpha  -  -  -  -  -  Erinaceidae  -  -  -  -  -  -  Echinosorex  -  -  -  -  -  -  -  Echinosorex gymnura  -  -  -  -  Pholidota  -  -  -  -  -  Manidae  -  -  -  -  -  -  Manis  -  -  -  -  -  -  -  Manis javanica  -  -  -  -  Scandentia  -  -  -  -  -  Tupaiidae  -  -  -  -  -  -  Tupaia  -  -  -  -  -  -  -  Tupaia dorsalis  -  -  -  -  -  -  -  Tupaia gracilis  -  -  -  -  -  -  -  Tupaia longipes  -  -  -  -  -  -  -  Tupaia tana  -  -  -  -  Artiodactyla  -  -  -  -  -  Cervidae  -  -  -  -  -  -  Muntiacus  -  -  -  -  -  -  -  Muntiacus atherodes  -  -  -  -  -  -  -  Muntiacus muntjak  -  -  -  -  -  -  Rusa  -  -  -  -  -  -  -  Rusa unicolor  -  -  -  -  -  Suidae  -  -  -  -  -  -  Sus  -  -  -  -  -  -  -  Sus barbatus  -  -  -  -  -  Bovidae  -  -  -  -  -  -  Bos  -  -  -  -  -  -  -  Bos javanicus  -  -  -  -  -  Tragulidae  -  -  -  -  -  -  Tragulus  -  -  -  -  -  -  -  Tragulus kanchil  -  -  -  -  -  -  -  Tragulus napu  -  -  -  -  Rodentia  -  -  -  -  -  Sciuridae  -  -  -  -  -  -  Lariscus  -  -  -  -  -  -  Sundasciurus  -  -  -  -  -  -  -  Sundasciurus hippurus  -  -  -  -  -  -  -  Sundasciurus lowii  -  -  -  -  -  Hystricidae  -  -  -  -  -  -  Hystrix  -  -  -  -  -  -  -  Hystrix brachyura  -  -  -  -  -  -  -  Hystrix crassispinis  -  -  -  -  -  -  Trichys  -  -  -  -  -  -  -  Trichys fasciculata  -  -  -  -  -  Muridae  -  -  -  -  -  -  Sundamys  -  -  -  -  -  -  -  Sundamys muelleri  -  -  -  -  -  -  Leopoldamys  -  -  -  -  -  -  -  Leopoldamys sabanus  -  -  -  -  Primates  -  -  -  -  -  Hominidae  -  -  -  -  -  -  Homo  -  -  -  -  -  -  -  Homo sapiens  -  -  -  -  -  -  Pongo  -  -  -  -  -  -  -  Pongo pygmaeus  -  -  -  -  -  Cercopithecidae  -  -  -  -  -  -  Presbytis  -  -  -  -  -  -  Macaca  -  -  -  -  -  -  -  Macaca fascicularis  -  -  -  -  -  -  -  Macaca nemestrina  -  -  -  -  -  Tarsiidae  -  -  -  -  -  -  Cephalopachus  -  -  -  -  -  -  -  Cephalopachus bancanus  -  -  -  -  Carnivora  -  -  -  -  -  Felidae  -  -  -  -  -  -  Prionailurus  -  -  -  -  -  -  -  Prionailurus bengalensis  -  -  -  -  -  -  Pardofelis  -  -  -  -  -  -  -  Pardofelis marmorata  -  -  -  -  -  -  Neofelis  -  -  -  -  -  -  -  Neofelis nebulosa  -  -  -  -  -  -  Catopuma  -  -  -  -  -  -  -  Catopuma badia  -  -  -  -  -  Mustelidae  -  -  -  -  -  -  Amblonyx  -  -  -  -  -  -  -  Amblonyx cinereus  -  -  -  -  -  -  Martes  -  -  -  -  -  -  -  Martes flavigula  -  -  -  -  -  Mephitidae  -  -  -  -  -  -  Mydaus  -  -  -  -  -  -  -  Mydaus marchei  -  -  -  -  -  Ursidae  -  -  -  -  -  -  Helarctos  -  -  -  -  -  -  -  Helarctos malayanus  -  -  -  -  -  Canidae  -  -  -  -  -  -  Canis  -  -  -  -  -  -  -  Canis lupus  -  -  -  -  -  -  -  -  Canis lupus familiaris  -  -  -  -  -  Viverridae  -  -  -  -  -  -  Paguma  -  -  -  -  -  -  -  Paguma larvata  -  -  -  -  -  -  Prionodon  -  -  -  -  -  -  -  Prionodon linsang  -  -  -  -  -  -  Arctictis  -  -  -  -  -  -  -  Arctictis binturong  -  -  -  -  -  -  Paradoxurus  -  -  -  -  -  -  -  Paradoxurus hermaphroditus  -  -  -  -  -  -  Hemigalus  -  -  -  -  -  -  -  Hemigalus derbyanus  -  -  -  -  -  -  Viverra  -  -  -  -  -  -  -  Viverra tangalunga  -  -  -  -  -  Herpestidae  -  -  -  -  -  -  Herpestes  -  -  -  -  -  -  -  Herpestes brachyurus  -  -  -  -  -  -  -  Herpestes semitorquatus