SNP annotation file (VCF format) for the 14,268 <i>Eucalyptus</i> probesets in the EucHIP60K successful reallocated onto the <i>Psidium</i> guajava genome assembly using whole-genome alignment and extraction of synteny blocks.

This file highlights the 1,241 SNPs that were polymorphic in our study (GT =“0/1”) and also displays the functional effect predictions resulting from the allelic changes at these genomic variants on the protein-coding loci in the P. guajava assembly using SnpEff terms (ANN field). Homology relationship with the protein-coding loci in the E. grandis assembly was inferred with the Comparative Annotation Toolkit program. (VCF)