Additional file 2 of Prediction of evolutionary constraint by genomic annotations improves functional prioritization of genomic variants in maize

Additional file 2: Table S1. Functional information about gene models in the maize reference genome: experimental gene annotations and percentile for SIFT conservation and phylogenetic nucleotide conservation (PNC). Table S2. Number of genes prioritized by SIFT conservation or phylogenetic nucleotide conservation (PNC), in each CornCyc pathway. Table S3. Prioritization of nonsynonymous SNPs by SIFT conservation or phylogenetic nucleotide conservation (PNC): number of selected SNPs in hybrid panels and expected number of putative deleterious mutations per inbred line based on minor allele frequency (MAF) in reference panel.