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Cannabis sativa L. Male-Specific Unmapped-Read Assembly (MUA) Raw Data

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Figshare2025-01-22 更新2026-04-28 收录
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https://figshare.com/articles/dataset/_i_Cannabis_sativa_i_L_Male-Specific_Unmapped-Read_Assembly_MUA_Raw_Data/28257863
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This dataset comprises unmapped reads obtained by sequentially mapping the SRR10578275 reads from the NCBI SRA to GCF_029168945.1, GCA_025232715.1, GCA_016165845.1, GCA_900626175.2, GCA_003417725.2, GCA_013030365.1, and GCA_000230575.5. Mapping : BWA-MEM (v0.7.17), Bowtie2 (v2.5.3), and BBMap (v39.08) with default parameters. Assembly : ABySS (v2.3.8; k=33, kc=3), Redundans (v2.0.1; minimap2reduce)Gene prediction : MAKER (v3.01.03; AED: =The MUA.7z file includes the following files:assembly.fa: high probability of containing contaminated sequences.gene_prediction.cdsgene_prediction.gff3protein.faconservative_protein.fa: To conservatively remove contaminated sequences, sequences were annotated against RefSeq databases for plants, archaea, fungi, bacteria, plasmids, and protozoa, with only those sequences having the lowest e-values originating from the plant database retained.
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2025-01-22
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