Supporting data for MuSpAn: A toolbox for Multiscale Spatial Analysis

This repository contains the data required to reproduce all analyses presented for the manuscript: MuSpAn: A Toolbox for Multiscale Spatial Analysis The data is organised into two main folders: domains_for_figs_2_to_6 (MuSpAn domains) Four domains of increasing size from regions within a healthy mouse colon (10x Genomics Colon Atlas panel). Four samples of AKPT mouse tumors (10x Genomics 480 custom panel). misc_checkpoint_data (Metadata - analysis checkpointing) Colormap dictionaries for consistent visualization with the published figures. Checkpointing files to support analyses requiring extended computation times. Annotation data used for MuSpAn labeling. The MuSpAn domains were created and saved using v1.2.0 of MuSpAn. This data is to be used with the associate python notebooks which can be found at: https://github.com/joshwillmoore1/Supporting_material_muspan_paper These notebooks both reproduce the analysis conducted in the study and serve as example material for MuSpAn usage, fully explained and linked to relevent documentation.