Anvi'o Profiles

Anvi'o profiles for patients P200, P202, P204, P206, P207, P208, P209, P210, P211, P212, P213, P214, P215, P216, P217, P218, P219, P423, P427, P500, P502, P503.<br>Anvi'o profiles are generated using anvi'o v2.0.2. If you have anvi'o v2.0.2 running on your system, run the following command in a given directory to visualize the metagenome:<br>$ anvi-interactive -p PROFILE.db -c CONTIGS.db<br>From the interface that will pop-up in your browser, you can access to Vineis et al's genome bins by loading the collection by using the "Load Bin Collections" interface, and selecting "MANUAL" from the list.<br>You can use a later version of anvi'o as far as the version number starts with v2. However, you may be required to use anvi'o upgrade scripts to upgrade your database files.