Additional file 1 of Transcriptome and proteome profiling reveal complementary scavenger and immune features of rat liver sinusoidal endothelial cells and liver macrophages

Additional file 1. Gene set enrichment analysis. The Excel file (.xls) shows the output of gene set enrichment analysis (GSEA) [49, 50] of pre-ranked gene lists from the rat LSEC and KC RNA-seq datasets, associated with Gene Ontology (GO) biological processes (BP). The genes were pre-ranked based on expression. We have used the C5 collection of annotated gene sets in the Molecular Signatures Database (release 6.2; BP) [53] which consists of gene sets derived from GO [51, 52]. Name of worksheets: “GSEA_plot”, “GSEA_RNAseq_LSEC_BP”, and “GSEA_RNAseq_KC_BP”. The worksheet named “GSEA_Plot” contains the selected enriched BPs shown in Fig. 4.