GM_processed_files_build39.zip

Processed GigaMUGA SNP genotype data on the Collaborative Cross founders, useful for preparing Diversity Outbred mouse genotypes for use with R/qtl2 (http://kbroman.org/qtl2) Equivalent to https://doi.org/10.6084/m9.figshare.5404759.v2 but with physical and genetic map files revised for mouse build GRCm39 GM_allelecodes.csv: allele codes used for all SNPs GM_foundergeno*.csv: consensus genotypes for each of the 8 founder lines GM_gmap*.csv: Genetic map positions of the SNPs GM_info.csv: marker, chr, Mbp position, cM position, and tier GM_pmap*.csv: Physical map positions (in Mbp) of the SNPs针对协作杂交（Collaborative Cross）创始品系的经预处理GigaMUGA单核苷酸多态性（Single Nucleotide Polymorphism, SNP）基因型数据，可用于制备多样性远交（Diversity Outbred）小鼠基因型以适配R/qtl2分析工具（http://kbroman.org/qtl2）。该数据集等效于https://doi.org/10.6084/m9.figshare.5404759.v2所发布的资源，但针对小鼠参考基因组组装版本GRCm39修订了物理图谱与遗传图谱文件。 GM_allelecodes.csv：适用于所有单核苷酸多态性位点的等位基因编码表 GM_foundergeno*.csv：8个创始品系各自的一致性基因型数据 GM_gmap*.csv：单核苷酸多态性位点的遗传图谱位置信息 GM_info.csv：包含标记、染色体、百万碱基对（Mbp）位置、厘摩（cM）位置及标记分级 GM_pmap*.csv：单核苷酸多态性位点的物理图谱位置（单位为Mbp）