Average proportions of significant SNPs in the simulation study.

The values in the table represent the proportions of SNPs (averaged over 10 replications) found to be significant. The significance level was set to 0.0001. The results are present for 4 scenarios, which are described in the section: "Evaluation via simulated association studies ". * For these methods in the scenario with 3 underlying discrete subpopulations we took 2 principal components and 2 ancestry estimates, as recommended by the authors. Average proportions of significant SNPs in the simulation study.