Additional file 3: of Alternative polyadenylation produces multiple 3’ untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

Table S2. Alternative 3′ ends for Olfr genes annotated from the 4 datasets. The 3′ end positions and the relative abundances of the resulting 3’UTR isoforms were obtained using our IsoSCM workflow. For each individual dataset: Gene name, Length of the minimal CDS (covered by reads), Counts in the minimal CDS, Number of 3’UTR isoforms; for each utr (utr1-utr5): length and relative abundance (%RA); quantitative 3’UTR isoform profile (see Fig. 4 for the definition of the profiles). Additional column for the male_IS2014 dataset: pUTR vs. dUTR1 abundance flag (RA_utr1 > RA_utr2). Additional columns for comparisons: Very short flag (length < 100 in one of the dataset), ∆length (length difference between 2 datasets), conserved flag (∆length < 200), robust flag (ROBUST, conserved in all the comparisons of the 4 datasets), sex-specific flag (SEX-SPE, not conserved in same-sex comparisons but conserved between males and females in both experimental series), experience-specific flag (EXP-SPE, conserved in same-sex comparison but not conserved between males and females in both experimental series). (XLSX 1067 kb)