Supporting data for "A single-cell transcriptomic atlas tracking the neural basis of division of labor in an ant superorganism".
收藏Figshare2023-12-26 更新2026-04-08 收录
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https://figshare.com/articles/dataset/Supporting_data_for_A_single-cell_transcriptomic_atlas_tracking_the_neural_basis_of_division_of_labor_in_an_ant_superorganism_/16616353/2
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资源简介:
<b>Files provided in this dataset:</b>1. <b>M.Pharaonis.genome.fasta.gz </b>: genome assembly of the pharaoh ant in fasta format.2. <b>M.pharaonis.genome.gtf.gz</b> : gene annotations of the pharaoh ant genome in gene transfer format (GTF).3. <b>M.pharaonis.cds.fasta.gz</b> : coding sequences of genes of the pharaoh ant in fasta format.4. <b>M.pharaonis.pep.fasta.gz</b> : peptide sequences of genes of the pharaoh ant in fasta format.5. <b>M.pharaonis.gene.function.annotation.gz</b> : functional annotations of all protein-coding genes of the pharaoh ant.6. <b>Mpha.umi.geneMatrix.gz</b> : the digital gene expression matrix (the number of UMIs per gene per nucleus) of the pharaoh ant.7. <b>Mpha.rds</b>: analysis results of the 206,367 pharaoh ant single-nucleus transcriptomes generated by Seurat.8. <b>M.pharaonis.marker.genes.gz</b> : marker genes for the 43 cell clusters identified in the pharaoh ant brains.9. <b>NCBI_CNSA_correspond_list </b>: correspondence across NCBI accession, CNSA accession, library, biological replicate, adult phenotype, read1 length, cell barcode1 position, cell barcode2 position, and UMI position for the raw sequencing data.10. <b>Amel.rds </b>: analysis results of the honeybee single-cell transcriptome data (PMID: 32080242) generated by Seurat.11. <b>Dmelmb.rds</b> : analysis results of the fly midbrain single-cell transcriptome data (PMID: 29671739) generated by Seurat.12. <b>Dmelmb.glia.recluster.rds</b> : analysis results of re-clustering the glial cells from Dmelmb.rds (PMID: 29671739) generated by Seurat.13. <b>scripts_for_data_analyses.tar.gz </b>: in-house scripts.14. <b>Readme.txt</b> : more detailed descriptions for each file.
提供机构:
Zhu, Yuanzhen; Wang, Mingyue; Zhang, Xiafang; Zhong, Wenjiang; Yang, Huanming; Liu, Chuanyu; Wei, Xiaoyu; Wen, Tinggang; Liu, Weiwei; Xu, Xun; Wang, Zhifeng; Jiang, Wei; Wu, Liang; Dai, Wei; Li, Qiye; Zhao, Jie; Lu, Haorong; Liu, Yang; Zhang, Pei; Dethlefsen, Bjarke Hamberg; J.Boomsma, Jacobus; Guo, Qunfei; Dai, Xueqin; Han, Lei; Wang, Jian; Zhang, Guojie; Xie, Nianxia; Nagel, Manuel; liu, longqi
创建时间:
2023-12-26



