Supplementary datasets for Oh, et al., "Novel genome characteristics contribute to the invasiveness of Phragmites australis (common reed)"

Approved USGS disclaimer: These data are preliminary or provisional and are subject to revision. They are being provided to meet the need for timely best science. The data have not received final approval by the U.S. Geological Survey (USGS) and are provided on the condition that neither the USGS nor the U.S. Government shall be held liable for any damages resulting from the authorized or unauthorized use of the data. Once approved by USGS, these data will be also available through ScienceBase at https://doi.org/10.5066/P9NLU6Q4Additional Disclaimer Note by Authors: All authors have approved these datasets, however they are subject to revision based on the peer-review and the USGS final approval. Supplementary Dataset 1. Phragmites australis reference version 1.0 gene models and syntelog pairsSupplementary Dataset 2. Ortholog groups identified among P. australis and five monocots Supplementary Dataset 3. GO clusters enriched among P. australis ortholog groups showing conserved or increased gene copy numbers due to P. australis-specific duplicationsSupplementary Dataset 4. RNA-Seq raw read counts and expression rank percentiles for P. australis gene models for invasive and native genotypes.Supplementary Dataset 5. RNA-Seq results comparing basal-level expression of P. australis genes among invasive and native genotypes Supplementary Dataset 6. GO terms enriched among P. australis genes with significantly different basal-level expression among invasive and native genotypes.Supplementary Dataset 7. RNA-Seq results for endophyte-responses of P. australis genotypes Supplementary Dataset 8. GO terms enriched among P. australis genes whose expression were significantly induced or repressed by endophyte inoculation.