External data archive for hadal-binning-benchmark: metagenomic binning workflows on Atacama Trench hadal sediments

This record archives the large external data files used by the hadal-binning-benchmark repository, a reproducible benchmark of metagenomic genome-binning tools and multi-sample binning workflows applied to Atacama Trench hadal sediment metagenomes. The archive supports the repository workflows and analysis layer by providing large files that are not tracked directly in GitHub, including sample assemblies, read alignments, JGI-format coverage matrices, and CAMISIM strain-simulation outputs. The GitHub repository contains the Snakemake workflows, analysis scripts, tracked summary tables, final figures, documentation, and download instructions. The archived data are intended to support reproducibility of the MSc thesis project “Evaluation of Bioinformatic Approaches To Recover Microbial Diversity From Deep-Sea Sediments For Genome-Centric Analysis” and the associated hadal-binning-benchmark repository. Raw metagenomic reads are not included in this Zenodo record and should be accessed through the relevant ENA/NCBI SRA accession when available.