Datasets for Cornet, Magain et al. Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria.
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<b>Multiple Sequences Alignments </b>(FASTA file format) for the various trees in the study by Cornet, Magain et al. <i>Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria.</i><br><b>Individual genes (OGs)</b>- 1160 OGs x 16 taxa: prot MSAs (= single-copy OGs)- 378 OGs x 28 taxa: prot and nucl MSAs (= neighbor genes)<br>- 99 OGs x 16 taxa: prot and nucl MSAs (= 28 CORs)- 90 OGs x 28 taxa: prot and nucl MSAs (= 25 CORs)<br><b>Supermatrices (concats)</b>- 1160 OGs x 16 taxa: 100 jackknife (JK) replicates (prot MSAs and trees)- 378 OGs x 28 taxa: prot and nucl MSAs<br>- 99 OGs x 16 taxa: prot and nucl MSAs- 90 OGs x 28 taxa: prot and nucl MSAs<br>
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2020-04-08
