METRIN-KG

Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontology Directory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg. └── metrin-kg-data ├── ontology │ └── emi.ttl.gz ├── processed │ ├── globi │ │ ├── correctedBiologicalSexNames.tsv │ │ ├── correctedBodyPartNamesGlobi.csv │ │ ├── correctedLifeStageNamesGlobi.csv │ │ ├── mappedBiologicalSexNames.tsv │ │ ├── unmappedBiologicalSexNames.tsv │ │ ├── verbatim_mappedBodyPartNamesGlobi.csv │ │ ├── verbatim_mappedLifeStageNamesGlobi.csv │ │ ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv │ │ └── verbatim_unmappedLifeStageNamesGlobi_mod.csv │ ├── KG │ │ ├── enpkg-rdf-v4.tar.gz │ │ ├── globi_output.ttl.gz │ │ ├── taxonomy_output.ttl.gz │ │ └── trydb_output.ttl.gz │ ├── trydb │ │ ├── EmiMappingToTryDb.txt │ │ ├── qudtMappingToTryDb_full.txt │ │ └── qudtMappingToTryDb.txt │ ├── wdTax_duplicates.txt │ ├── wdTax_GloBI.txt.gz │ ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz │ ├── wdTax_SPARQL_lineage_filtered.txt.gz │ ├── wdTax_SPARQL_lineage.txt.gz │ ├── wdTax_SPARQL.txt.gz │ └── wdTax_TRYdb.txt.gz └── raw ├── enpkg_wd_pfId.csv.gz ├── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv └── TRYdb_40340.txt.gz