PhD Thesis Chapter 2: Isopod transcriptomes

Danielle Stringer PhD thesis Chapter 2: Development and evaluation of a custom bait design based on 469 single-copy protein-coding genes for exon capture of isopods (Philosciidae: Haloniscus).Six assembled isopod transcriptomes used in orthology assignment: Haloniscus sp., Paraplatyarthrus sp., Paraplatyarthrus subterraneus, Porcellionides pruinosus, Armadillidium vulgare, and Ceratothoa sp.本内容为Danielle Stringer博士论文第二章：基于469个单拷贝蛋白编码基因（single-copy protein-coding genes）的定制诱饵设计开发与评估，用于等足类（Isopoda）潮虫科（Philosciidae）卤等足虫属（Haloniscus）的外显子捕获（exon capture）。本研究共使用6个已组装的等足类转录组（transcriptome）开展直系同源群分配（orthology assignment），涉及类群如下：卤等足虫未定种（Haloniscus sp.）、副扁潮虫未定种（Paraplatyarthrus sp.）、地下副扁潮虫（Paraplatyarthrus subterraneus）、灰潮虫（Porcellionides pruinosus）、普通卷甲虫（Armadillidium vulgare）以及角水虱未定种（Ceratothoa sp.）