MOESM2 of Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome

Additional file 2. This file contains all supplementary tables relating to the characterisation of goat lncRNAs. Table S2. Candidate goat lncRNAs: a shortlist of novel gene models assessed for coding potential using CPC, CPAT, PLEK, blastp vs. Swiss-Prot, and HMMER vs. Pfam. Table S5. Goat gene models considered non-coding by either CPC, CPAT or PLEK but showing sequence homology to either a known protein (in Swiss-Prot) or protein domain (in Pfam-A). Table S7. Number of novel goat lncRNA gene models identified per chromosome. Table S9. Number of novel goat lncRNA gene models identified, by category. Table S11. Alignments of novel goat lncRNA gene models to sheep, cattle and human lncRNA. Table S20. Expression level estimates for 4392 novel goat lncRNAs, as transcripts per million (TPM), which were assessed using 54 RNA-seq libraries (20 tissues plus one cell type under two different conditions, for each sample four individuals were sequenced).