Genotype data for \"Oryza glumaepatula: A wild relative to improve drought tolerance in cultivated rice\"

This archive holds single nucleotide polymorphism (SNP) data derived from second-generation sequencing (NGS) of the Oryza glumaepatula panel described in the manuscript below. The SNPs were called against a new Oryza glumaepatula reference genome described in the manuscript (NCBI accession # ALNU03000000 ). The format is binary PLINK format (dataset consists of 3 files: bed,bim,fam files where bin is a SNP map, .fam is a sample information table, and .bed is a binary encoded genotype call matrix) Please refer to PLINK 1.9 documentation for conversion to other formats: https://www.cog-genomics.org/plink/ Two archives are uploaded here: the full 14M SNP dataset, and the subset used for GWAS analysis (785k SNPs)本归档文件包含源自下述论文中所述的短颖稻（Oryza glumaepatula）群体的二代测序（next-generation sequencing, NGS，简称NGS）所得的单核苷酸多态性（single nucleotide polymorphism, 简称SNP）数据。上述SNP是基于该论文中所述的全新短颖稻参考基因组进行分型得到的，该参考基因组的NCBI登录号为ALNU03000000。本数据集采用二进制PLINK格式存储，包含3个文件：.bed、.bim与.fam文件，其中.bim文件为SNP图谱，.fam文件为样本信息表，.bed文件为二进制编码的基因型分型矩阵。如需转换为其他格式，请参考PLINK 1.9官方文档：https://www.cog-genomics.org/plink/。本次共上传两个归档文件：其一为包含全部1400万个SNP的完整数据集，其二为用于全基因组关联分析（genome-wide association study, 简称GWAS）的子集数据集，该子集包含78.5万个SNP。