Yassine et al: M catarrhalis Supp Data

Supplementary_data_1 Metadata and QUAST results for the final M. catarrhalis dataset used in this study
Supplementary_data_2 Clonal complex (CC) information by goeBURST
Supplementary_data_3 EggNOG mapper results (core genes)
Supplementary_data_4 Per-genome assignment rates for all genes included in the core genome multilocus sequence typing scheme
Supplementary_data_5 1,319 cgMLST profiles for M. catarrhalis genomes used in this study
Supplementary_data_6 Per-gene assignment rates for all genes included in the core genome multilocus sequence typing scheme
Supplementary_data_7 1,319 cgMLST profiles for non-M. catarrhalis genomes used in this study
Supplementary_data_8 Pairwise distance matrix between non-M. catarrhalis and M. catarrhalis genomes used in this study
Supplementary_data_9 Genomic characteristic of M. catarrhalis genomes used in this study
Supplementary_data_10 Description of SR core genes
Supplementary_data_11 Description of SS core genes
Supplementary_data_12 Clade characteristics
Supplementary_data_13 Quality control thresholds used for the DCHS genomes
Supplementary_data_14 Details of genomes available in NCBI SRA database with information about excluded genomes
Supplementary_data_15 Details of genomes available in NCBI nucleotide/assembly database with information about excluded genomes
Supplementary_data_16 Assembly quality control thresholds used for the non-DCHS genomes
Supplementary_data_17 Details of Moraxella genomes available in rMLST database
Supplementary_data_18 Details of Moraxella genomes used to investigate the phylogenetic placement of M. catarrhalis among Moraxella species
Supplementary_data_19 Details of motifs, genes, primers used in this study
Supplementary_data_20 Accession numbers of genes sequences used in this study