Turnaround time computed using NCBI BLAST+ on SMP server and mpiBLAST on the HPC cluster.
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It was observed that if a number of aligned sequences is large then mpiBLAST outperforms NCBI BLAST+ by roughly 51 times for sequence 6 (849 bp in length) and by roughly 1000 times for sequence 2 (4857 base pairs in length). (No. of aligned Sequences = 100000; No. of sequences = 2; Type: Nucleotide; Average base pair length: 2853; Query sequences file: ss1_Table_4_and_5_Sequences.fasta (Text S4); Search database: In-house large nucleotide database (size = 246 GB after formatting)).
创建时间：
2014-06-30
