Additional file 2-analysis-results

Additional File 2: MS Excel file containing all results from the network analyses.<br>Table S1: Homologues-based transcript-phenotype listTable S2-S3:Analysis results for the modules in the middle network and moulting network respectively, includingmodule size, enriched GO terms with smallest p-values, p-values of enrichment analyses based onhomologues, module preservation Z_summary, number of known moulting-associated genes,proportion of TF and DE genes.Table S4:Analysis results for the modules in the global network, including module size, enriched GO terms withsmallest p-values, p-values of enrichment analyses based on homologues, regularized logisticregression coefficients, number of known moulting-associated genes, proportion of TF and DE genes.Table S5-S7:Module assignment results for the known moulting-associated transcripts in the middle, moulting andglobal network; the ranks of these transcripts based on three types of centrality measurements withinmodules; whether they were intramodular hubs or not.Table S8:Two types of RIF scores for the transcripts annotated as transcription factorsTable S9-S11:Centrality measurements, average ranks and annotations for the nodes in three selected modules(yellowgreen, steelblue and violet).Table S12:Annotations of the nodes with highest average ranks from the selected modules.Table S13:Available RNAi results for nodes from the eight selected important modules and nodes with highaverage ranks from modules without passing any criteria.