File S1 - Tracing Arab-Islamic Inheritance in Madagascar: Study of the Y-chromosome and Mitochondrial DNA in the Antemoro

Supplementary tables and figures. Figure S1, MDS plot of FST between Malagasy populations and the Comoros using NRY haplogroup frequencies (Kruskal stress: 0.172). Figure S2, MDS plot of FST computed from Y haplogroup frequencies between the Antemoro and populations from various geographic regions (Kruskal stress =0.227). Figure S3, MDS plot computed from FST values between Malagasy populations, based on HVI data. Figure S4, PCA computed from mitochondrial haplogroups frequency in Malagasy and Comoros populations. Figure S5, MDS plots of FST computed from HVI haplotypes between the Antemoro and populations from various geographic regions. Table S1, Y-STR profiles in the Antemoro. Table S2, Database used for the analysis of Y haplogroup frequencies. Table S3, Database used for the analysis of the seven Y-STR markers. Table S4, J1 haplotype references used for the median-joining network. Table S5, T1 haplotype references used for the median-joining network. Table S6, HVI and HVII profiles in the Antemoro. Table S7, Database used for HVI analysis. Table S8, Table of population pairwise FST values based on Y haplogroup frequencies. Table S9, Shared haplotypes between the Ampanabaka, other Malagasy populations and the Comoros, using 17 Y-STR markers. Table S10, Shared haplotypes between the Anteony, other Malagasy populations and the Comoros, using 17 Y-STR markers. Table S11, Shared haplotypes between the Antalaotra, other Malagasy populations and the Comoros, using 17 Y-STR markers. Table S12, Shared haplotypes between the Ampanabaka and the database using seven YSTR markers. Table S13, Shared haplotypes between the Antalaotra and the database, using seven Y-STR markers. Table S14, Shared haplotypes between the Anteony and the database using seven Y-STR markers. Table S15, Population pairwise FST values based on HVI in our three Antemoro groups. Table S16, Shared HVI haplotypes between the Ampanabaka and the other Malagasy populations. Table S17, Shared HVI haplotypes between the Antalaotra and other Malagasy populations. Table S18, Shared HVI haplotypes between the Anteony and other Malagasy populations. Table S19, Shared HVI unique haplotypes between the Ampanabaka and populations from the database. Table S20, Shared HVI unique haplotypes between the Antalaotra and populations from the database. Table S21, Shared HVI unique haplotypes between the Anteony and populations from the database. (PDF)