Detect R-loop signal by DRIP-seq in PA1 cell line
收藏NIAID Data Ecosystem2026-05-01 收录
官方服务：
资源简介：
DRIP-seq of PA1 cells Overall design: DRIP-seq of PA1 cells
应用场景：
创建时间：
2023-12-25
相关数据集
DREAM-seq, an endonucleases-assisted mapping of R-loops: MCF-7. DREAM-seq, an endonucleases-assisted mapping of R-loops: MCF-7
DREAM-seq, an endonucleases-assisted mapping of R-loops: MCF-7 Overall design: Two MCF-7 cell samples, including Mock and Rnase H treated samples
NIAID Data Ecosystem40
Genome-wide mapping of G-quadruplex structures with CUT&Tag. Genome-wide mapping of G-quadruplex structures with CUT&Tag
Single-stranded genomic DNA can fold into G-quadruplex (G4) structures or form DNA:RNA hybrids (R loops). Recent evidence suggests that such non-canonical DNA structures affect gene expression, DNA me
NIAID Data Ecosystem20
ssDRIP-seq analysis of R-loop level in shCTRL, shMETTL3 and shDDX21 HeLa cells
gDNA was estracted and digested with cocktail of restrict enzymes MseI, DdeI, AluI, MboI, incubated at 37°C for 6 h. After purified by phenol/chloroform extraction, fragmented DNA was resuspended by
NIAID Data Ecosystem10
S1 File -
Fig A, Representative experiment of DRIVE Assay in RNaseH1 pretreated (black bars) and not pretreated (white bars) samples. (Panel A) Three positive (RPL13A, BTBD19, MYADM) and two negative (SNRPN, a-
NIAID Data Ecosystem20
Training matrices
Training matrices containing RPM of 12 high throughput sequencing datasets scored within experimental R-loop peaks and random regions in HEK293, K562 and HeLa cell lines.
Figshare2025-01-22 更新10
