Over-represented Gene Ontology terms among differentially expressed genes.

Table lists selected biological processes significantly over-represented among differentially expressed genes, with respect to their occurrence in the A. fumigatus Af293 genome. To identify over-represented Gene Ontology terms, loci having significantly different expression were analyzed by the Expression Analysis Systematic Explorer (EASE) (PMID:14519205), which is implemented in MEV within the TIGR TM4 microarray data analysis suite (http://TM4.org). Numbers of genes in the indicated Gene Ontology categories were subjected to statistical analysis by EASE[25] to identify categories overrepresented compared with the whole genome data set. Only categories with Fisher's exact test probabilities below 5.00E-02 were included. Full results of the analysis can be found in Table S3.