SAPP: Structure Aware PTM Prediction

Datasets/ - SAPPphos: Contains datasets for serine/threonine (S/T) phosphorylation training and testing. - Kinase-specific: Contains datasets curated for kinase group–specific phosphorylation training and testing. - otherPTM: Contains datasets for other post-translational modifications (e.g., acetylation, methylation, sumoylation, ubiquitination) used for training and testing. - RSA_files: Precomputed Relative Solvent Accessibility (RSA) files for all protein sequences used in training and inference. Results/ - Kinase: Prediction and evaluation results for kinase-specific PTM prediction models. - otherPTM: Prediction and evaluation results for other PTM types. - RSAresult: Contains ablation study results related to RSA features. - Other files were used for generating figures and tables in the main manuscript and supplementary materials.